Breast Cancer Multi-omics Database
Public overview of the breast-tissue cohort, spatial omics assets and multi-omics tables currently available in BC-MOD.
Disease progression
5 pathological stagesRelationship analysis
End-to-end project architectureBC-MOD connects bulk and spatial measurements through standardized identities, a queryable data platform, analysis services and research-facing pages.
01
Data sources
02
Standardization
Patient & sample identityBN → MN → DH → DCIS → IDC
Validation & lineageFiles, versions, quality and SP/ST matches
03
BC-MOD data platform
PostgreSQL + parquetStructured molecular facts, spatial catalogue and sparse expression assets
Gene & protein annotationKnowledge graph
04
Services & analysis
FastAPI query layerGene, omics and spatial endpoints
Analysis layerQC · differential · enrichment · association
05
Research workspace
Omics coverage
Observed records and sample coverageGenomics
100%126,828 variants
Transcriptomics
79%31,834 genes
Proteomics
80%8,506 proteins
PTM
100%18,711 sites
Metabolomics
80%3,641 metabolites
Microbiomics
80%21,851 ASVs
Spatial transcriptomics
100%239,599 spots · 6,175 genes
Spatial proteomics
100%521,235 cells · 60 markers
Recent datasets
View all datasets →| Dataset | Name | Cancer type | Cases | Samples | Tissue | Download |
|---|---|---|---|---|---|---|
| ST | Spatial transcriptomics Spatial transcriptomics | Breast cancer | 27 | 79 | Breast tissue | RDS |
| SP | Spatial proteomics Spatial proteomics | Breast cancer | 28 | 84 | Breast tissue | RDS |
| MRNA | mRNA expression Transcriptomics | Breast cancer | 37 | 100 | Breast tissue | XLSX |
| SNP | Germline SNP variants Genomics | Breast cancer | 36 | 101 | Breast tissue | XLSX |
| SNV | Somatic SNV variants Genomics | Breast cancer | 27 | 109 | Breast tissue | XLSX |
| INDEL | Germline INDEL variants Genomics | Breast cancer | 36 | 101 | Breast tissue | XLSX |
Project documentation
Reference materials项目说明文档内容将在此处持续整理。
API document暂未提供内容。